Package: FLightR 0.5.6

Eldar Rakhimberdiev

FLightR: Reconstruct Animal Paths from Solar Geolocation Loggers Data

Spatio-temporal locations of an animal are computed from annotated data with a hidden Markov model via particle filter algorithm. The package is relatively robust to varying degrees of shading. The hidden Markov model is described in Movement Ecology - Rakhimberdiev et al. (2015) <doi:10.1186/s40462-015-0062-5>, general package description is in the Methods in Ecology and Evolution - Rakhimberdiev et al. (2017) <doi:10.1111/2041-210X.12765> and package accuracy assessed in the Journal of Avian Biology - Rakhimberdiev et al. (2016) <doi:10.1111/jav.00891>.

Authors:Eldar Rakhimberdiev [aut, cre], Anatoly Saveliev [aut], Julia Karagicheva [aut], Simeon Lisovski [ctb], Johannes de Groeve [ctb]

FLightR_0.5.6.tar.gz
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FLightR.pdf |FLightR.html
FLightR/json (API)
NEWS

# Install 'FLightR' in R:
install.packages('FLightR', repos = c('https://eldarrak.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/eldarrak/flightr/issues

On CRAN:

movement-ecologysolar-geolocation-loggerssolar-geolocator

7.95 score 21 stars 470 scripts 335 downloads 18 exports 74 dependencies

Last updated 1 months agofrom:6b6d674b08. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 27 2024
R-4.5-winOKOct 27 2024
R-4.5-linuxOKOct 27 2024
R-4.4-winOKOct 27 2024
R-4.4-macOKOct 27 2024
R-4.3-winOKOct 27 2024
R-4.3-macOKOct 27 2024

Exports:BAStag2TAGSfind.stationary.locationfind.times.distributionFLightR2MovebankGeoLight2TAGSget_ZI_distancesget.tags.datamake.calibrationmake.gridmake.prerun.objectmap.FLightR.ggmapplot_likelihoodplot_lon_latplot_slopes_by_locationplot_util_distrrun.particle.filterstationary.migration.summarytwGeos2TAGS

Dependencies:askpassbitbitopsbootCircStatscircularclassclassIntclicolorspacecpp11curlDBIdigestdotCall64dplyre1071fansifarverfieldsgenericsgeosphereggmapggplot2gluegtablehttrisobandjpegjsonliteKernSmoothlabelinglatticelifecyclemagrittrmapsMASSMatrixmgcvmimemunsellmvtnormnlmeopensslpillarpkgconfigplyrpngproxypurrrR6RColorBrewerRcppRcppArmadillorlangs2scalessfspspamstringistringrsuntoolssystibbletidyrtidyselecttruncnormunitsutf8vctrsviridisLitewithrwk

FLightR with black-tailed godwit vignette from MEE 2017

Rendered fromFLightR_with_black-tailed_godwit_vignette_from_MEE_2017.Rmdusingknitr::rmarkdownon Oct 27 2024.

Last update: 2021-07-02
Started: 2017-03-09